“This finding is based on a false premise, that early dogs have to be phenotypically different than wolves. Dogs are wolves in the first place. There is no reason to assume there should be physical changes unless the dogs method of living changed.”
The Russian experiment involving the domestication of fox suggests that there are rapid physiological changes to canids when domestication begins to take hold. I’ve also read that genetically dogs & wolves are practically indistinguishable. Whatever is going on with the evolution of the dogs body type it is both rapid & genetically subtle.
http://news.discovery.com/animals/pets/dogs-not-as-close-kin-to-wolves-as-thought-140116.htm
http://www.hngn.com/articles/22228/20140117/dogs-did-not-originate-from-wolves.htm
BTW the dogs in this article aren't very different from wolves either but they are clearly dogs Large canids at the Gravettian Předmostí site, the Czech Republic