“Organized religion is going to have to learn to accept God’s universe(s) as they are. His wisdom, not ours, controls it. All we can do is learn it, to whatever extent we can.”
I don’t think “organized religion” has that problem...it is generally the secular world and even at times science fields themselves that seem to have the problems...
Organized religion is getting better at accepting God's universe(s) recently (last 100 years or so).
Terra really does orbit Sol in an ellipse. As do the other planets and stuff in this solar system. It took a while for that to be accepted by organized religion, even with the evidence that God provided.