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The Search for Genes Leads to Unexpected Places
NY Times ^ | April 26, 2010 | CARL ZIMMER

Posted on 04/29/2010 9:35:42 PM PDT by neverdem

Edward M. Marcotte is looking for drugs that can kill tumors by stopping blood vessel growth, and he and his colleagues at the University of Texas at Austin recently found some good targets — five human genes that are essential for that growth. Now they’re hunting for drugs that can stop those genes from working. Strangely, though, Dr. Marcotte did not discover the new genes in the human genome, nor in lab mice or even fruit flies. He and his colleagues found the genes in yeast.

“On the face of it, it’s just crazy,” Dr. Marcotte said. After all, these single-cell fungi don’t make blood vessels. They don’t even make blood. In yeast, it turns out, these five genes work together on a completely unrelated task: fixing cell walls.

Crazier still, Dr. Marcotte and his colleagues have discovered hundreds of other genes involved in human disorders by looking at distantly related species. They have found genes associated with deafness in plants, for example, and genes associated with breast cancer in nematode worms. The researchers reported their results recently in The Proceedings of the National Academy of Sciences.

The scientists took advantage of a peculiar feature of our evolutionary history. In our distant, amoeba-like ancestors, clusters of genes were already forming to work together on building cell walls and on other very basic tasks essential to life. Many of those genes still work together in those same clusters, over a billion years later, but on different tasks in different organisms.

Studies like this offer a new twist on Charles Darwin’s original ideas about evolution. Anatomists in the mid-1800s were fascinated by the underlying similarities of traits in different species — the fact that a bat’s wing, for example, has all the same parts as a human hand. Darwin argued...

(Excerpt) Read more at nytimes.com ...


TOPICS: Culture/Society; News/Current Events; Technical; Testing
KEYWORDS: geneticevolution; genetics; genomics; godsgravesglyphs; phenologs
Systematic discovery of nonobvious human disease models through orthologous phenotypes
1 posted on 04/29/2010 9:35:43 PM PDT by neverdem
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To: neverdem

bttt


2 posted on 04/29/2010 10:01:17 PM PDT by Matchett-PI (Jim Wallis speaks for Christians the same way that Jesse Jackson speaks for all blacks.)
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To: neverdem

sounds like “deep homology” is showing that many genes were
present at the beginning(and never evolved), they just got
reoriented...But how were they reoriented? By epigenetic
material? So is the secret due to epigenetic activity and
not genome mutation? or both? or is there some other
factor? How does a gene that build fungal cell walls, learn
how to build blood vessels? (completely different structures)
It’s almost as if a gene family is a template for different
species...hmm...fully functional for the primitive stages
of life, and fully functional for more “advanced” stages...and
whose origin is completely unknown...again, more questions

hmmmmm...


3 posted on 04/30/2010 12:20:09 AM PDT by Getready (Wisdom is more valuable than gold and diamonds, and harder to find.)
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To: neverdem

Just don’t ask the president about his; you’re liable to end up in Kenya or Indonesia or some d*mn place.


4 posted on 04/30/2010 2:04:21 AM PDT by Jack Hammer
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To: Getready
sounds like “deep homology” is showing that many genes were present at the beginning(and never evolved),

That's an unwarranted assumption, IMHO, if it predates the divergence between the plant and animal kingdoms.

How does a gene that build fungal cell walls, learn how to build blood vessels? (completely different structures)

I'm not so sure. Both spheroidal and cylindrical objects require rounded surfaces.

5 posted on 04/30/2010 4:34:15 AM PDT by neverdem (Xin loi minh oi)
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To: El Gato; Ernest_at_the_Beach; Robert A. Cook, PE; lepton; LadyDoc; jb6; tiamat; PGalt; Dianna; ...
Low vitamin D levels are related to ms brain atrophy, cognitive function, studies show

Vit. B link to diabetic kidney malfunction: study

New "Splinter Cell" Super-Immune Cells Created; Ready to Fight Cancer, AIDS

What You Eat Affects You, Your Kids and Your Grandkids

FReepmail me if you want on or off my health and science ping list.

6 posted on 04/30/2010 5:00:55 AM PDT by neverdem (Xin loi minh oi)
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To: Getready; neverdem
How does a gene that build fungal cell walls, learn how to build blood vessels? (completely different structures)

No, it never "learns" anything, if a mutation works and gives an advantage for the organism it will spread. If it is harmful for the organism this particular mutation is eventually lost as the organism can not compete with the others. If it is neutral it will survive as a hitchhiker in the genome.
7 posted on 05/01/2010 12:51:51 AM PDT by AdmSmith
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To: SunkenCiv

Did you see this?


8 posted on 05/04/2010 6:52:56 PM PDT by neverdem (Xin loi minh oi)
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To: neverdem; martin_fierro; StayAt HomeMother; Ernest_at_the_Beach; 1ofmanyfree; 21twelve; 240B; ...

· join list or digest · view topics · view or post blog · bookmark · post a topic · subscribe ·

 
Gods
Graves
Glyphs
Thanks neverdem!
In yeast, it turns out, these five genes work together on a completely unrelated task: fixing cell walls.
To all -- please ping me to other topics which are appropriate for the GGG list.
GGG managers are SunkenCiv, StayAt HomeMother, and Ernest_at_the_Beach
 

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· The Archaeology Channel · Excerpt, or Link only? · cgk's list of ping lists ·


9 posted on 05/05/2010 4:36:31 PM PDT by SunkenCiv ("Fools learn from experience. I prefer to learn from the experience of others." -- Otto von Bismarck)
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To: neverdem; SunkenCiv

Nice genes.

10 posted on 05/05/2010 5:38:37 PM PDT by colorado tanker
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To: neverdem; Tax-chick; Constitution Day
They have found genes associated with deafness in plants

No wonder my plants won't grow when I talk to 'em.

They're deaf!

or my breath is worse than I thought

11 posted on 05/05/2010 6:12:15 PM PDT by martin_fierro (< |:)~)
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To: Getready

Apparently these “templates” are modular...need 3 dimensional mapping to see the inter connections and parallels of phenotype response patterns to the actual genetics among the varied species.


12 posted on 05/05/2010 10:02:26 PM PDT by Domestic Church (AMDG)
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To: martin_fierro

Oh, the poor plants! I hope they can do something to help them.


13 posted on 05/06/2010 5:11:37 AM PDT by Tax-chick (It's a jungle out there, kiddies; have a very fruitful day.)
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To: Jack Hammer
Just don’t ask the president about his; you’re liable to end up in Kenya or Indonesia or some d*mn place.

We need to find out!

14 posted on 05/06/2010 2:46:59 PM PDT by Bellflower (If you are left DO NOT take the mark of the beast and be damned forever.)
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To: colorado tanker

Not entirely unexpected, either... :’)


15 posted on 05/06/2010 4:22:30 PM PDT by SunkenCiv ("Fools learn from experience. I prefer to learn from the experience of others." -- Otto von Bismarck)
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To: neverdem; SunkenCiv; blam; All

A really great book showing this kind of species transfer/economy of design is “Endless Forms Most Beautiful: The New Science of Evo Devo”, by Sean B. Carroll, 2005. For example the earthworm’s segments, trilobite segments, insect segments and mammalian spine are developmentally related.


16 posted on 05/07/2010 9:26:33 PM PDT by gleeaikin
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To: gleeaikin

Evo Devo... I feel I should be wearing a plastic flowerpot on my head... ;’)


17 posted on 05/08/2010 6:41:02 AM PDT by SunkenCiv ("Fools learn from experience. I prefer to learn from the experience of others." -- Otto von Bismarck)
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http://www.dailymotion.com/video/x1bpm9_devo-peek-a-boo_music
http://www.youtube.com/watch?v=i4WPRgbLURQ


18 posted on 05/08/2010 6:42:19 AM PDT by SunkenCiv ("Fools learn from experience. I prefer to learn from the experience of others." -- Otto von Bismarck)
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To: SunkenCiv; blam; All

SC, I enjoyed reading Firestone et al’s book on catastrophe on your recommendation. I hope you may get as much pleasure reading Carroll’s book on mine.


19 posted on 05/09/2010 2:28:20 PM PDT by gleeaikin
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To: gleeaikin
I may do it, it'll give me a good excuse to go into the bookstore for the first time in 2010, or maybe to the library instead. Thanks to spring, I've hit a plateau, and the three books I've been reading have become a little neglected.

Endless Forms Most Beautiful: The New Science of Evo Devo and the Making of the Animal Kingdom Endless Forms Most Beautiful:
The New Science of Evo Devo and
the Making of the Animal Kingdom

by Sean B. Carroll


20 posted on 05/09/2010 6:11:27 PM PDT by SunkenCiv ("Fools learn from experience. I prefer to learn from the experience of others." -- Otto von Bismarck)
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