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Artificial Life Experiments Show How Complex Functions Can Evolve
NSF ^ | May 8, 2003 | Staff

Posted on 05/08/2003 10:11:06 AM PDT by Nebullis

Artificial Life Experiments Show How Complex Functions Can Evolve

Arlington, Va.—If the evolution of complex organisms were a road trip, then the simple country drives are what get you there. And sometimes even potholes along the way are important.

An interdisciplinary team of scientists at Michigan State University and the California Institute of Technology, with the help of powerful computers, has used a kind of artificial life, or ALife, to create a road map detailing the evolution of complex organisms, an old problem in biology.

In an article in the May 8 issue of the international journal Nature, Richard Lenski, Charles Ofria, Robert Pennock, and Christoph Adami report that the path to complex organisms is paved with a long series of simple functions, each unremarkable if viewed in isolation. "This project addresses a fundamental criticism of the theory of evolution, how complex functions arise from mutation and natural selection," said Sam Scheiner, program director in the division of environmental biology at the National Science Foundation (NSF), which funded the research through its Biocomplexity in the Environment initiative. "These simulations will help direct research on living systems and will provide understanding of the origins of biocomplexity."

Some mutations that cause damage in the short term ultimately become a positive force in the genetic pedigree of a complex organism. "The little things, they definitely count," said Lenski of Michigan State, the paper's lead author. "Our work allowed us to see how the most complex functions are built up from simpler and simpler functions. We also saw that some mutations looked like bad events when they happened, but turned out to be really important for the evolution of the population over a long period of time."

In the key phrase, "a long period of time," lies the magic of ALife. Lenski teamed up with Adami, a scientist at Caltech's Jet Propulsion Laboratory and Ofria, a Michigan State computer scientist, to further explore ALife.

Pennock, a Michigan State philosopher, joined the team to study an artificial world inside a computer, a world in which computer programs take the place of living organisms. These computer programs go forth and multiply, they mutate and they adapt by natural selection.

The program, called Avida, is an artificial petri dish in which organisms not only reproduce, but also perform mathematical calculations to obtain rewards. Their reward is more computer time that they can use for making copies of themselves. Avida randomly adds mutations to the copies, thus spurring natural selection and evolution. The research team watched how these "bugs" adapted and evolved in different environments inside their artificial world.

Avida is the biologist's race car - a really souped up one. To watch the evolution of most living organisms would require thousands of years – without blinking. The digital bugs evolve at lightening speed, and they leave tracks for scientists to study.

"The cool thing is that we can trace the line of descent," Lenski said. "Out of a big population of organisms you can work back to see the pivotal mutations that really mattered during the evolutionary history of the population. The human mind can't sort through so much data, but we developed a tool to find these pivotal events."

There are no missing links with this technology.

Evolutionary theory sometimes struggles to explain the most complex features of organisms. Lenski uses the human eye as an example. It's obviously used for seeing, and it has all sorts of parts - like a lens that can be focused at different distances - that make it well suited for that use. But how did something so complicated as the eye come to be?

Since Charles Darwin, biologists have concluded that such features must have arisen through lots of intermediates and, moreover, that these intermediate structures may once have served different functions from what we see today. The crystalline proteins that make up the lens of the eye, for example, are related to those that serve enzymatic functions unrelated to vision. So, the theory goes, evolution borrowed an existing protein and used it for a new function.

"Over time," Lenski said, "an old structure could be tweaked here and there to improve it for its new function, and that's a lot easier than inventing something entirely new."

That's where ALife sheds light.

"Darwinian evolution is a process that doesn't specify exactly how the evolving information is coded," says Adami, who leads the Digital Life Laboratory at Caltech. "It affects DNA and computer code in much the same way, which allows us to study evolution in this electronic medium."

Many computer scientists and engineers are now using processes based on principles of genetics and evolution to solve complex problems, design working robots, and more. Ofria says that "we can then apply these concepts when trying to decide how best to solve computational problems."

"Evolutionary design," says Pennock, "can often solve problems better than we can using our own intelligence."


TOPICS: Culture/Society; Miscellaneous; News/Current Events
KEYWORDS: ai; crevolist
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To: donh
Check their forums; it's been a while since I've been over there. I don't think they have a document on it, though.

Just because they do it doesn't mean that they evolved to do so. We don't need atheists like you here.
41 posted on 05/08/2003 10:57:47 AM PDT by AmericanAge
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To: RonF
I have a question. Is there a conservative position on evolution?

If you follow these threads, you will see that there are quite a few of them.

42 posted on 05/08/2003 10:58:50 AM PDT by Lurking Libertarian (Non sub homine, sed sub Deo et lege)
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To: AmericanAge
aa ...

4. There is nothing good about evolution. Nothing evolves - period. Even diseases. It's all nonsense, as I just mentioned.





34 posted on 05/08/2003 10:48 AM PDT by AmericanAge


fC ...

What is really strange in our society and the FR ...

this gypsy cult of thieves have the reign of the store and shop too !
43 posted on 05/08/2003 10:58:51 AM PDT by f.Christian (( Marching orders: comfort the afflicted // afflict the comfortable ! ! ))
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To: AmericanAge
Yeah, look at how accurate polls are, for one.

Polls are raw data, not statistics. Statistics is a formal mathematical discipline not normally considered in the least questionable. Algebra can't vouch for the data it is applied to, and neither can statistics.

44 posted on 05/08/2003 10:59:51 AM PDT by donh
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To: null and void
What, are you going to side with all of the God-haters too?
45 posted on 05/08/2003 11:00:07 AM PDT by AmericanAge
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To: AmericanAge
"We don't need atheists like you here."

FR is a discussion place of ideas for EVERYONE to amiably explore concepts. Keep your exclusionary comments to yourself.
46 posted on 05/08/2003 11:00:10 AM PDT by webstersII
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To: Nebullis
I'm printing the paper now. Will comment late this afternoon or tonight after reading.
47 posted on 05/08/2003 11:00:49 AM PDT by Doctor Stochastic (Vegetabilisch = chaotisch is der Charakter der Modernen. - Friedrich Schlegel)
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To: nmh
Fossils don't show ANY transitional species but maybe this computer program with fix that too.

Same old threads, same old lies.

48 posted on 05/08/2003 11:01:00 AM PDT by Right Wing Professor
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To: webstersII
Fair enough.

But its surprising to see the number of atheists today.
49 posted on 05/08/2003 11:01:26 AM PDT by AmericanAge
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To: AmericanAge
We don't need atheists like you here.

Get lost, newbie.

50 posted on 05/08/2003 11:01:56 AM PDT by Right Wing Professor
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To: AmericanAge
Just because they do it doesn't mean that they evolved to do so.

And lacking evidence otherwise, that doesn't make it a poor bet that they didn't.

We don't need atheists like you here.

I'm not an athiest, and I belong here at least as much as someone who thinks statistics is a discredited science.

51 posted on 05/08/2003 11:03:45 AM PDT by donh
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To: donh
"Polls are raw data, not statistics."

Yes, but polls are *statistics* applied on top of the raw data. And unless you're expecting that everyone who is lying, it's the "statistics" that are wrong. Just in the same way that they try to use statistics to "prove" evolution. It's all pseudoscience.

52 posted on 05/08/2003 11:04:32 AM PDT by AmericanAge
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To: donh
"FR anarcho-loons"
53 posted on 05/08/2003 11:04:42 AM PDT by f.Christian (( Marching orders: comfort the afflicted // afflict the comfortable ! ! ))
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To: donh
"I'm not an atheist"

Then why are you supporting evolution? Do you not believe in the Bible?
54 posted on 05/08/2003 11:05:36 AM PDT by AmericanAge
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To: RonF
I have a question. Is there a conservative position on evolution?

Indeed there is. It's the same as the conservative position on gravity. Or the solar system. Or relativity.

55 posted on 05/08/2003 11:06:59 AM PDT by PatrickHenry (Felix, qui potuit rerum cognoscere causas.)
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To: Cedric
If ya can't find the fossils, rig a computer program to "prove" your theory.

The fossils do exist. The evolution of the horse from a species of small, forest dwelling omnivores to a species of large plans dwelling herbivores is confirmed by the fossil record.

I don't have a problem with God using science to get us where he wants us to go. I am secure that the Almighty uses His many powers at hand to form Creation.

56 posted on 05/08/2003 11:07:50 AM PDT by elbucko
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To: f.Christian
I'd really prefer you didn't address your posts to
me--I really dislike your fragmented impersonation
of a skitzophrenic with Attention Deficit Disorder.
57 posted on 05/08/2003 11:08:06 AM PDT by donh
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To: PatrickHenry
You too?

Am I the only one here who actually cares what the bible has to say???
58 posted on 05/08/2003 11:08:15 AM PDT by AmericanAge
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To: elbucko
That's not what the bible says. Read genesis. It's quite clear. And if you start saying "Well, that's just an analogy...", what parts of the bible CAN you believe?
59 posted on 05/08/2003 11:09:33 AM PDT by AmericanAge
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To: AmericanAge
Am I the only one here who actually cares what the bible has to say???

You're not alone in equating evolution with atheism. Many have that disorder, notwithstanding loads of testimony from theistic evolutionists to the contrary.

60 posted on 05/08/2003 11:10:28 AM PDT by PatrickHenry (Felix, qui potuit rerum cognoscere causas.)
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