Technically, freedom of religion in the colonies only applied to Christianity as all other “comparative religions” were considered pagan or false religions.
This was especially true of British, Scottish, French, Dutch, German, Italian, Spanish, Portuguese, Swiss, and Russian settlers.
Judaism was also considered consistent with Christianity as the root of Christianity. Islam was not in consideration except as a false belief system.
Just study Church History and a globe and follow the growth of freedom in the West.
The bill for establishing religious freedom, the principles of which had, to a certain degree, been enacted before, I had drawn in all the latitude of reason & right. It still met with opposition; but, with some mutilations in the preamble, it was finally past; and a singular proposition proved that it’s protection of opinion was meant to be universal. Where the preamble declares that coercion is a departure from the plan of the holy author of our religion, an amendment was proposed, by inserting the word “Jesus Christ,” so that it should read "” departure from the plan of Jesus Christ, the holy author of our religion” the insertion was rejected by a great majority, in proof that they meant to comprehend, within the mantle of it's protection, the Jew and the Gentile, the Christian and Mahometan, the Hindoo, and infidel of every denomination.
Thomas Jefferson on the 1786 Virginia Statute of Religious Freedom
Jefferson, who authored the Virginia statute of religious freedom that the first amendment was based upon was of the opinion that all religious faiths were to be protected from the intrusion of the government.