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IBM Helps University on Cancer Research Computer
abc.com ^ | 11/28/2001

Posted on 11/29/2001 11:51:32 AM PST by Physicist

NEW YORK (Reuters) - International Business Machines Corp. on Wednesday said it is working with the University of Pennsylvania on a large computer that will store mammogram data, helping doctors screen for breast cancer and find geographic clusters of people with the disease. Initially, the computer will be linked with four university hospitals, enabling the hospitals to store digital versions of mammograms and use analytical tools that can help diagnose and identify cancer cell clusters in the population, IBM said.

Once the computer is in place six to eight months from now, it could be used to link many more hospitals across the nation, said Robert Hollebeek, director of the National Scalable Cluster Lab at the University of Pennsylvania. [Note: The correct name is the National Scalable Cluster Project.]

The University of Pennsylvania has already been working with the government's Oak Ridge National Laboratory on sharing mammogram data with the hospitals, but without the larger computer would be unable to expand the project, Hollebeek said.

IBM, a computer services and hardware company, based in Armonk, NY, has been working on developing computing grids, such as this one, that will use the resources of computers located in many locations to make more powerful computers.


TOPICS: Miscellaneous; News/Current Events
KEYWORDS: techindex
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This is actually a shameless vanity post.

I posted this because it is the project I'm working on currently. The National Digital Mammography Archive has a design goal of 25 petabyte/year storage capacity. I'm this moment taking a break from the NDMA database design to plug it here.

Here's a further plug for IBM: the backend database engine is IBM's DB2 Universal Database.

So how did a group of particle physicists get to designing this thing? It's simple, really. This scale of datataking is comparable to the scale of the next generation of high energy physics experiments. We have expertise in very high-capacity data handling that is always beyond the reach of commercially available systems. This time we're pushing the envelope in a more socially relevant direction.

Here are some more links:

The National Scalable Cluster Project

The IBM Press Release: http://www.ibm.com/Press/prnews.nsf/jan/CEE95CDE0C20CDEE85256B12000DB78B
IBM Grid computing: http://www-1.ibm.com/servers/events/gridcomputing.pdf
The MSNBC story: http://www.msnbc.com/news/664322.asp#BODY

1 posted on 11/29/2001 11:51:32 AM PST by Physicist (sterner@sterner.hep.upenn.edu)
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To: Physicist
Yes, we ARE awesome. Thank you very much.

Go Big Blue!

2 posted on 11/29/2001 11:57:00 AM PST by softengine
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To: Physicist
That's great news! Just curious, I assume this is AIX - care to say why a windows platform was not chosen?
3 posted on 11/29/2001 11:59:31 AM PST by stainlessbanner
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To: stainlessbanner
Windows sucks.
4 posted on 11/29/2001 12:14:51 PM PST by softengine
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To: softengine
I just wanted to hear Physist say it. The MS guys will be along shortly with their claims of 5-9's on Win2k Data Center.....
5 posted on 11/29/2001 12:23:20 PM PST by stainlessbanner
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To: stainlessbanner
Right now we are running under AIX on 5 SP2 frames. The hospital machines run Win2K and Linux. The new back end (the reason for the press release) will be a 64-node Linux machine.
6 posted on 11/29/2001 12:32:13 PM PST by Physicist
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To: Physicist
So the major processor is RS6000 processor?

Guess we call it a Power4 now?

7 posted on 11/29/2001 12:49:00 PM PST by Ernest_at_the_Beach
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The new back end (the reason for the press release) will be a 64-node Linux machine.

I meant the back end!

8 posted on 11/29/2001 12:50:40 PM PST by Ernest_at_the_Beach
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To: Molecular Biologist; Enzymologist; RadioAstronomer; longshadow; PatrickHenry; Gordian Blade...
Nerd Alert
9 posted on 11/29/2001 12:53:23 PM PST by Physicist
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To: Ernest_at_the_Beach
Currently we are running on RS/6000 based SP2's. The database itself runs on an 8-way SMP node. Data handling is done by other SP2 nodes that are Power PC-based.

The new back end will be IBM's new e-server xSeries line. Our machine will be a custom job, so I don't think I can point to a model number. The nodes are based on Intel Xeons. It will come in a bunch of racks connected by gigabit ethernet.

10 posted on 11/29/2001 1:04:05 PM PST by Physicist
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To: Physicist
Nerd Alert

And I answer the call.

11 posted on 11/29/2001 1:09:01 PM PST by PatrickHenry
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To: Physicist; *tech_index
Thanks, got to do some catching up on the hardware,
it has changed a great deal since my mainframe days!
12 posted on 11/29/2001 1:10:40 PM PST by Ernest_at_the_Beach
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To: Physicist
Nice to be on the Nerd Alert ping list. They say nobody gets emotionally very far past senior year of high school...
13 posted on 11/29/2001 1:13:23 PM PST by Gordian Blade
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To: Physicist
Nice work!!!! :)
14 posted on 11/29/2001 1:37:55 PM PST by RadioAstronomer
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To: Physicist
Check out the Versant ODBMS for Websphere:

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Versant enJin Provides Dramatic Performance Improvements For E-business Applications  
Updated: Thursday, October 11, 2001 08:31 AM ET  Printer-friendly version
 
IBM-Based Benchmark Testing Also Shows Customer Savings of 60-66%

FREMONT, Calif., Oct. 11 /PRNewswire/ -- Versant Corporation (Nasdaq: VSNT, news, msgs), a leading provider of middleware infrastructure technology, today reported the results of a new benchmark demonstrating significant performance improvements when its Versant enJin, a transaction accelerator for application servers, is used in Java-based e-business applications. The testing, conducted at IBM's High Volume Web sites Lab, also demonstrated that enterprises can reduce their e-business application related hardware and software expenses by up to 66% when using Versant enJin.

The benchmark was conducted using a standard IBM WebSphere(TM) application server configuration. Several key metrics were taken, first using a base configuration without Versant enJin, then one with Versant enJin. The results, when using Versant enJin, were dramatic and included:


    * Round trip response times that were 10 times faster;

    * Throughput that increased by a factor of 9;
    * Data access speeds that were 50 times faster;
    * And, CPU utilization that was reduced significantly such that a Versant
      enJin/application server combination performed 4 to 8 times more work
      with the same amount of hardware and software.


"The net is that Versant enJin can substantially reduce IT expenditures for e-business applications while dramatically improving the performance of those applications," said Nick Ordon, Versant Chief Executive Officer. "A typical global enterprise can expect to save more than $1 million over a standard configuration costing $1.7 million, a saving of 66%. This translates to bottom line improvements, both by helping to generate incremental revenues and by reducing operational overhead."

"Today, up to 61% of an e-business application processing time is attributed to the latency occurring between the application server in the middle-tier and the enterprise data in the back-end tier," continued Tom Miura, Versant Sr. VP of Operations. "Versant is designed to minimize that latency in order to give customers the ability to handle more transactions in less time. Not only can we reduce data access by 97.4% but we have demonstrated how we can improve response times and throughput while using only 12.5 to 25% of the hardware and software typically required in a standard application server configuration. For those customers seeking to reduce IT expenditures, Versant enJin provides a win-win solution."

The benchmark testing was conducted using Versant enJin within the middle-tier architecture of a typical IBM WebSphere application server deployment processing a typical e-business application, a stock transaction. The performance improvements and cost savings were comparable to those reported by Versant customers using any J2EE-compliant application server and Relational Database Management System (RDBMS).

Versant enJin is able to boost performance so dramatically because it serves as a middle-tier object cache, offering all the performance benefits of an in-memory cache with the reliability attributes of a distributed, transaction-oriented database. Object data used in all J2EE-based applications can be reliably stored and accessed from within the middle-tier, thereby greatly reducing the time required to move and transform data between the middle-tier, where the application is processed, and the back-end tier, where enterprise data is typically stored in relational database systems.

A complete description of the benchmark results can be found at www.versant.com/products/enjin/whitepapers . Versant enJin is designed to seamlessly integrate with any J2EE-compliant application server. More information about Versant enJin can be found at www.versant.com/products/enjin .


    About Versant Corporation


Versant Corporation (Nasdaq: VSNT, news, msgs) has led the industry in highly scalable, reliable object management solutions for complex enterprise-level systems since its founding in 1988. The company's Object Data Management System (ODBMS) serves as the core database for fraud detection, yield management, real-time data collection and analysis, operation support systems (OSS) and other large-scale applications in the telecommunications, financial services, transportation and defense industries. Versant enJin and Versant Developer Suite, based on the same proven technology and seamless object persistence, help accelerate both the development cycle and the transaction speed for e-business and Internet infrastructure companies. For more information, call 510-789-1500 or visit www.versant.com .

This press release contains forward-looking information within the meaning of Section 27A of the Securities Act of 1933 and Section 21E of the Securities Exchange Act of 1934, and is subject to the safe harbor created by those sections. Actual events or results may differ materially from those discussed in the forward-looking statements as a result of various factors. These factors include, among other things, an individual customer's J2EE-based application performance, the impact on an application using varying J2EE-based architectures, the amount of cost savings for specific J2EE applications, and the market opportunity for Versant products and services. This and other related risks are described in more detail in the Company's filings with the Securities and Exchange Commission, including the Company's most recent Reports on Form 10-K and 10-Q made with the Securities and Exchange Commission. The forward-looking statements included in this press release are made only as of the date of this press release, and the Company has no obligation to publicly update these forward-looking statements to reflect subsequent events or circumstances.

Versant and Versant ODBMS are trademarks of Versant Corporation. All other company names and product names are trademarks of the individual companies.


                    MAKE YOUR OPINION COUNT -  Click Here

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SOURCE Versant Corporation

CONTACT: Public Relations, Crystal Lee of S&S Public Relations, +1-847-955-0700, or crystal@sspr.com; or Investor Relations, Chris Rosgen of Liolios Group, +1-949-574-3860, or chris@liolios.com

 
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15 posted on 11/29/2001 2:36:49 PM PST by sourcery
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To: Physicist
... a large computer that will store mammogram data ...

Any way to adjust the sensitivity of those pics so you could produce an attractive calendar? Sort of like the one published by Sports Illustrated? This could really put Penn on the map.

16 posted on 11/29/2001 2:41:29 PM PST by PatrickHenry
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To: PatrickHenry
Any way to adjust the sensitivity of those pics so you could produce an attractive calendar? Sort of like the one published by Sports Illustrated?

We could, but it would end up looking more like the Mütter Medical Museum Calendar than the SI calendar.

17 posted on 11/29/2001 2:53:20 PM PST by Physicist
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To: Physicist
Mütter Medical Museum Calendar

Ghaa-a-a-ack! Must be one of those guys the Taliban supposedly skinned alive.

18 posted on 11/29/2001 4:56:25 PM PST by VadeRetro
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To: VadeRetro
Must be one of those guys the Taliban supposedly skinned alive.

It looks like he's being prepped for a gall bladder removal. Either that, or he's an evolutionist being re-educated by devout creationists.

19 posted on 11/29/2001 5:21:28 PM PST by PatrickHenry
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To: PatrickHenry
It looks like he's being prepped for a gall bladder removal.

The surgery was a success but the patient died. I mean he is no more. He is deceased. He has expired. This man is an ex-patient.

20 posted on 11/29/2001 5:45:06 PM PST by VadeRetro
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