Assuming the same rate (otherwise there is no basis for comparison), is not the VAT only on the ‘value added?’ i.e. if the baker buys flour for 2$ and sells the baked good for $3 is the tax not on just the $1 difference?
In the end, as long as the tax mechanism is consistent to all parties and is hard to evade (and hence give unfair advantage to criminals), I’m more concerned with how much government takes in and what it is spent on. Solve that problem and then the taxation mechanism can be dealt with as a mere accounting problem.
I prefer a simple, direct, obvious tax on retail sales goods. No mystery about who is paying what, and if you want government revenue to go up or down, you see exactly what needs to be done.