Keyword: genomics
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BGI Genomics—the Chinese Communist Party-linked genomics firm flagged by U.S. officials as “mining” the DNA of Americans—has collaborated extensively with the Bill & Melinda Gates Foundation, The National Pulse can reveal.The company has recently come under fire following a 60 Minutes exposé on the company’s use of COVID-19 tests to “collect, store and exploit biometric information” on American citizens, according to former U.S. intelligence officials. What’s more, a recent Reuters article linked the firm to the Chinese Communist Party’s military.In addition to the Obama administration enabling the firm to gain a foothold in the U.S., the Bill & Melinda Gates...
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NIH Researchers Have Generated the First Complete X Chromosome Sequence...The results, published today (July 14, 2020) in the journal Nature, show that generating a precise, base-by-base sequence of a human chromosome is now possible, and will enable researchers to produce a complete sequence of the human genome.
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Humans and mice share approximately 98% of genes, and have similar physiology and anatomy. This is because we share a relatively recent common ancestor, around 80 million-years-ago. In contrast, the ancestor of all animals lived over 500 million-years-ago. As genomic data becomes available for more animal species a detailed family tree can be created, allowing novel insight into the genomes of long extinct species. In the guest post below Jordi Paps summarises recent research that attempts to reconstruct the genome of the ‘first animal’ by using the genomic data available on living animals. The first animals emerged on Earth at...
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The roots of inheritance may extend beyond the genome, but the mechanisms remain a puzzle. When Brian Dias became a father last October, he was, like any new parent, mindful of the enormous responsibility that lay before him. From that moment on, every choice he made could affect his newborn son's physical and psychological development. But, unlike most new parents, Dias was also aware of the influence of his past experiences — not to mention those of his parents, his grandparents and beyond. Where one's ancestors lived, or how much they valued education, can clearly have effects that pass down...
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WASHINGTON — It has been a decade since the human genome was first sequenced and the 3.2 billion rungs of our DNA ladder laid out for analysis. That achievement — mapping the fundamental biological code that defines our species and characterizes us as individuals — may have implications as important as the splitting of the atom or the discovery of the wheel. We can already envision custom-designed medicines as well as custom-designed fetuses. There are ethical questions to be asked and scientific questions to be answered. And nothing about the subject is simple. But credit “Genome: Unlocking Life’s Code,” an...
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By differentiating between bacterial and viral fevers, a new test may help doctors decide whether to prescribe antibiotics. Fevers are a common symptom of many infectious diseases, but it can be difficult to tell whether viruses or bacteria are the cause. By measuring gene activity in the blood of 22 sick children, Gregory Storch, a pediatrician and infectious disease researcher at Washington University in St. Louis and colleagues were able to distinguish bacteria-sparked fevers from ones kindled by viruses. The activity of hundreds of genes changed as the children’s immune systems responded to the pathogens, but the team found that...
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Chemical 'fingerprint' in the blood could provide clues to health later in life Metabolites indicate future lung function, bone density, and blood pressure Could pave the way for new treatments for age related conditionsA revolutionary new blood test could tell you how long you will live, and how quickly you will age. Scientists have discovered a chemical ‘fingerprint’ in the blood that may provide clues to an infant's health and rate of ageing near the end of life. The discovery raises the prospect of a simple test at birth that could help doctors stave off the ravages of disease in...
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Recent advances in genomic and post-genomic technologies have facilitated a genome-wide analysis of the insecticide resistance-associated genes in insects. Through bed bug, Cimex lectularius transcriptome analysis, we identified 14 molecular markers associated with pyrethroid resistance. Our studies revealed that most of the resistance-associated genes functioning in diverse mechanisms are expressed in the epidermal layer of the integument, which could prevent or slow down the toxin from reaching the target sites on nerve cells, where an additional layer of resistance (kdr) is possible. This strategy evolved in bed bugs is based on their unique morphological, physiological and behavioral characteristics and has...
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Whole-genome analysis helps identify source of MRSA outbreak on infant ward. A superbug outbreak that plagued a special-care neonatal unit in Cambridge, UK, for several months last year was brought to an end by insights gained from genome sequencing. The case, reported today in Lancet Infectious Disease, marks the first time that scientists have sequenced pathogen genomes to actively control an ongoing outbreak1. Sharon Peacock, a clinical microbiologist at the University of Cambridge, and her team became involved in the outbreak after three infants at nearby Rosie Hospital’s 24-cot special-care baby unit tested positive for methicillin-resistant Staphylococcus aureus (MRSA) within...
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Sequencing DNA from individual cells is changing the way that researchers think of humans as a whole. All Nicholas Navin needed was one cell — the issue was how to get it. It was 2010, and the postdoctoral fellow at Cold Spring Harbor Laboratory in New York was exploring the genetic changes that drive breast cancer. Most of the cancer-genome studies before then had ground up bits of tumour tissue and sequenced the DNA en masse, giving a consensus picture of the cancer’s genome. But Navin wanted to work out the sequence from individual cells to see how they had...
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Method raises hopes for routine whole-genome sequencing in neonatal intensive care. A faster DNA sequencing machine and streamlined analysis of the results can diagnose genetic disorders in days rather than weeks, as reported today in Science Translational Medicine1. Up to a third of the babies admitted to neonatal intensive care units have a genetic disease. Although symptoms may be severe, the genetic cause can be hard to pin down. Thousands of genetic diseases have been described, but relatively few tests are available, and even these may detect only the most common mutations. Whole-genome sequencing could test for many diseases at...
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Enlarge Image Zooming in. This diagram illustrates a chromosome in ever-greater detail, as the ENCODE project drilled down to DNA to study the functional elements of the genome. Credit: ENCODE project The human genome—the sum total of hereditary information in a person—contains a lot more than the protein-coding genes teenagers learn about in school, a massive international project has found. When researchers decided to sequence the human genome in the late 1990s, they were focused on finding those traditional genes so as to identify all the proteins necessary for life. Each gene was thought to be a discrete piece...
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Researchers scanning the genomes of African-Americans say they see evidence of natural selection as their ancestors adapted to the harsh conditions of their new environment in America. The scientists, led by Li Jin of the Chinese Academy of Sciences in Shanghai, report in the journal Genome Research that certain disease-causing variant genes became more common in African-Americans after their ancestors reached American shores — perhaps because they conferred greater, offsetting benefits. Other gene variants have become less common, the researchers say, like the gene for sickle cell hemoglobin, which in its more common single-dose form protects against malaria. The Shanghai...
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If inherited genes are not to blame for our most common illnesses, how can we find out what is? Since the human genome was sequenced, over 10 years ago, hardly a week has gone by without some new genetic "breakthrough" being reported. Last week five new "genes for Alzheimer's disease" generated sometimes front-page coverage across the globe. But take a closer look and the reality is very different. Among all the genetic findings for common illnesses, such as heart disease, cancer and mental illnesses, only a handful are of genuine significance for human health. Faulty genes rarely cause, or even...
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Our science correspondent reveals his genetic code. Soon you will too. Michael Cariaso, developer of the human genetics wiki SNPedia and the online gene analysis tool Promethease, has helped thousands of people unlock the secrets of their own genetic code. But when it comes to making his own gene screening tests publicly available for all the world to see, Cariaso prefers to hold the key close to his vest, worrying that such transparency might lead to personal embarrassment or discrimination by insurance companies or future employers. “Someone later might discover,” he says, “that I have genes for a short penis...
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In 2008, Time magazine named retail DNA testing the invention of the year. A scant two years later it is questionable whether this exciting new industry will survive heavy-handed regulation by the U.S. Food and Drug Administration (FDA). In June, the FDA sent letters [PDF] to the leading direct to consumer (DTC) genetic testing companies asserting the agency's authority to require "premarket review" of their tests in order to "protect the public from medical products that may pose an unreasonable risk of harm." So what are the "unreasonable risks" posed by the DTC tests?Unlike X-rays or pharmaceuticals, there are no...
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Contact: Peggy Calicchia calicchi@cshl.edu 516-422-4012 Cold Spring Harbor Laboratory Mitochondrial genome analysis revises view of the initial peopling of North America June 29, 2010 – The initial peopling of North America from Asia occurred approximately 15,000-18,000 years ago, however estimations of the genetic diversity of the first settlers have remained inaccurate. In a report published online today in Genome Research (www.genome.org), researchers have found that the diversity of the first Americans has been significantly underestimated, underscoring the importance of comprehensive sampling for accurate analysis of human migrations. Substantial evidence suggests that humans first crossed into North America from Asia over...
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Ten years after President Bill Clinton announced that the first draft of the human genome was complete, medicine has yet to see any large part of the promised benefits. For biologists, the genome has yielded one insightful surprise after another. But the primary goal of the $3 billion Human Genome Project — to ferret out the genetic roots of common diseases like cancer and Alzheimer’s and then generate treatments — remains largely elusive. Indeed, after 10 years of effort, geneticists are almost back to square one in knowing where to look for the roots of common disease. One sign of...
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For 15 years, J. Craig Venter has chased a dream: to build a genome from scratch and use it to make synthetic life. Now, he and his team at the J. Craig Venter Institute (JCVI) in Rockville, Maryland, and San Diego, California, say they have realized that dream. In this week's Science Express (www.sciencemag.org/cgi/content/abstract/science.1190719), they describe the stepwise creation of a bacterial chromosome and the successful transfer of it into a bacterium, where it replaced the native DNA. Powered by the synthetic genome, that microbial cell began replicating and making a new set of proteins. This is "a defining moment...
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WEST LAFAYETTE, Ind. - While trying to find a DNA-based test to determine the sex of lake sturgeon, Purdue University researchers found that the sturgeon genome contains trematode genes that didn't originally belong to it and may harbor a protozoan parasite that causes a sexually transmitted disease in humans. Genetics professor Andrew DeWoody and postdoctoral associate Matthew C. Hale found the parasite and pathogen genes while analyzing DNA from the gonads of lake sturgeon, a species that is on the decline because of overfishing and pollution of its habitats. The only way to determine a lake sturgeon's sex currently is...
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