No, that theres no evidence for an intelligence that guides each atom on it's little errand. Salt crystals are not cubical because there's an intelligence guiding each wayward ion into it's little spot in the cube. (Maybe in FesterWorld, not in mine.)
Of course, when humans build an implement they do not imbue its particles with intelligence either. That does not mean it was not intelligently designed. The circumstantial evidence (which is apparently more credible than eyewitness testimony) is enough to reasonably infer as much.