It's not clear, but there seems to be a LOT of evidence that the Foundation is hinky to the max!
And as for the FBI 'clearing' Hillary, it has done no such thing. Comey cannot bring charges against Hillary, I believe ONLY the DOJ can convene a Grand Jury, which can hear testimony and see evidence regarding the charges. Sounds like Loretta Lynch has told Comey that won't happen, so he's stuck without anything to investigate.
But an indictment could still happen in a Trump Presidency, because the Attorney General serves at the pleasure of the President, and Loretta Lynch will be OUTTA THERE come Jan. 21st. When Trump names a new AG, that person could call for a Grand Jury, then all of this becomes active, again.
Now the Clinton Foundation is another kettle of fish entirely, and one that is working against Hillary in this election.
Hopefully, as she's moving boxes out of her office, Federal Marshalls will grab her by the arms and take her into custody.