Washington used federal troops against the Whiskey Rebellion.
Other examples The “Dorr Rebellion” in Rhode Island in 1842; the Abolition disturbances in Kansas between 1854 and 1858; the railroad strikes of 1877, extending through West Virginia, Maryland, Pennsylvania, Ohio, and Indiana; the Chicago strike of 1894; the San Francisco fire of 1906; the West Virginia coal strikes of 1921; and lastly, the “Bonus War” of 1932.
And which of those cited above were the waging of war against the states?
Whatever else might be said about the Civil War, that the federal government waged war against States cannot be denied without denying the whole of the federal government’s justifications.