I think this discussion gives “science” far too much credit or authority to begin with. Before we worry that science “disproves” anything, let us first ask, on what grounds does “science” have any authority in the first place? And then let us ask secondly, on what grounds is “science” imputed greater epistemological authority than any other source of knowledge?
Your comment reminds me of an excellent book I read many moons ago by F.A. Hayek. It is entitled “The Counter Revolution of Science.” Have you read it? If you haven’t, a strongly recommend you pick up a copy as it is right up your alley. Here’s a brief synopsis:
http://www.mises.org/store/Counter-Revolution-of-Science-The-P415C0.aspx