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FR Folding@Home Project Update - We're Now #57 of all teams with 17,000,000 Points
PANDE GROUP, CHEMISTRY DEPARTMENT, STANFORD UNIVERSITY ^ | 12/23/2006 | Stanford University

Posted on 12/23/2006 12:24:32 PM PST by texas booster

Merry Christmas to all of the folders among the ranks of Free Republic!

We have reached #57 on the list of teams worldwide, 3 FReepers are in the Top 1,000 of all folders and we are stomping the bejebers out of the DUmmies and Daily Kos.

A year ago we were just beginning to expand. Now we have about 170 regular contributors with nearly 1,050 computers using F@H as their screensaver.

Folding@Home makes a real difference in basic research into such diseases as Alheimer's, Parkinson's and BSE.

All it takes is a little free time to download the core, which runs in the background. Safe, clean and effective!


TOPICS:
KEYWORDS: alheimers; cancer; fh; folding
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Our Free Republic team of 415 members is comprised primarily of Free Republic members in good standing. We have banded together to donate our excess CPU cycles to a worthy cause. Via distributed computing, millions of computers around the world contribute directly to scientific research, in the quest for a greater understanding of diseases such as Alzheimer's, Cancer, and Mad Cow (BSE).

Currently, the team is in 57th place (with 1,050 active CPUs - 89,000 completed Work Units and 17.10 million points).

This is an entirely voluntary program, and if you want to learn more, please see the links posted below (or read one of the previous 20+ folding threads).

Thank you and a very Merry Christmas to you and your families!

1 posted on 12/23/2006 12:24:40 PM PST by texas booster
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To: 1066AD; 11Bush; A.Hun; abner; AbsoluteGrace; Advil; aft_lizard; ahayes; Alexander Rubin; ...

Pinging over to a new thread. We will be looking back at what we have accomplished the last year and Howdying out to friends that we have made.

Keep on folding!


2 posted on 12/23/2006 12:26:44 PM PST by texas booster (Join FreeRepublic's Folding@Home team (Team # 36120))
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To: mschalock; namsman; neb52; netmilsmom; non-anonymous; NonValueAdded; norton; NRA1776; NurdlyPeon; ..

Pinging over to a new thread. We will be looking back at what we have accomplished the last year and Howdying out to friends that we have made.

Keep on folding!


3 posted on 12/23/2006 12:27:46 PM PST by texas booster (Join FreeRepublic's Folding@Home team (Team # 36120))
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To: texas booster
Folding@Home FAQ for new users:

What is Folding@Home?
A Stanford University project to find out how proteins fold.

Why it's important: Proteins folding wrong causes all kinds of diseases, like Alzheimer's, Parkinson's, and forms of cancer. Folding@Home uses novel computational methods and large scale distributed computing, to simulate timescales thousands to millions of times longer than previously achieved. Through Folding@home, scientists now have the horsepower to study the mechanics of protein folding. With its ability to share the workload among hundred of thousands of computers economically, Folding@home can help scientists understand how proteins snap, or don't, into their predestined shapes - and may help to explain the origins of diseases such as Alzheimer's and apparently unrelated diseases. We're fueling research that could end all that.


How does it work?: You download a safe, tested program (see link below) that is certified by Stanford University. It gets work from Stanford, runs calculations using your spare computer power, and sends the results back to the University.

Is it safe? Yes! Folding@Home rarely effects computer performance in any way and won't compromise your privacy in any way. It only uses the computing power you aren't using so it doesn't slow down other programs.


How do I get started folding for Team FreeRepublic?:
1.) Download the folding program from Stanford University's folding download page (Folding@home Client Download). Type in your desired username.
2.) Type in 36120 for the team number. THIS IS VERY IMPORTANT - if you get the number wrong, you won't be folding for team FreeRepublic!
3.) The third question asks, "Launch automatically at machine startup, installing this as a service?" - We recommend you answer YES. Otherwise you will have to manually start the program after every reboot.


How can my computer help? Even if they were given exclusive access to all of the world's supercomputers, Stanford still wouldn't have as much processing power as they get from the supercluster of people's desktop systems Folding@home relies on. Modern supercomputers are essentially a cluster of hundreds of processors linked by fast networking. But Stanford needed the power of hundreds of thousands of processors, not just hundreds.


There's no reason to not get involved! It's free, easy, and you can know you're helping every minute without lifting a finger.

*******************************************

List of Relevant Folding Links
Why Fold - Watch This !!


Another Folding Clip


Folding@home Client Download


FreeRepublic.com Folder Stats


Extreme Overclockers Stats for FreeRepublic


Another Stats Page


*******************************************
Competition (Not!!) Dummies ..Daily Kos


Dummie Folding Threads #7 #8 #9#10#11 #12


**************************************************
Other Useful Stuff - Links


How much are those work units worth? And what are they?
All Projects Listed
Point Summary for Workunits


Stat Image Generator


Fahmon Third Party Monitoring Software

**************************************
Past FreeRepublic Folding threads


#1 #2 #3 #4 #5 #6 #7 #8 #9 #10 #11 #12 #13 #14 #15 #16 #17 #17 #18 #19 #20#21#22 #23 #24 #25 #26 #27

4 posted on 12/23/2006 12:30:59 PM PST by texas booster (Join FreeRepublic's Folding@Home team (Team # 36120))
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To: texas booster

While the nature of the fold is determined by the sequence, it is encoded in a very complicated manner. Thus, protein folding can be seen as a connection between the genome (sequence) and what the proteins actually do (their function).

There has been a lot of discussion on results of genetic research. The Folding@Home project is an excellent way to contribute to the research!

5 posted on 12/23/2006 12:34:10 PM PST by texas booster (Join FreeRepublic's Folding@Home team (Team # 36120))
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To: faq

Thank you very much for joining the team.

Your system is folding away. Please ping us if you have any questions or need configuration help.


6 posted on 12/23/2006 12:36:16 PM PST by texas booster (Join FreeRepublic's Folding@Home team (Team # 36120))
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To: texas booster

BTTT


7 posted on 12/23/2006 12:39:13 PM PST by E.G.C.
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To: E.G.C.

Team # 36120 bump


8 posted on 12/23/2006 12:42:28 PM PST by Drango (A liberal's compassion is limited only by the size of someone else's wallet.)
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To: texas booster

Bumpity bump.


9 posted on 12/23/2006 12:48:26 PM PST by processing please hold
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To: All
My shameless self-promotion for this thread:

If you're interested in tracking your folding machine(s) over the web, please Freepmail me.

Available features include:


10 posted on 12/23/2006 12:49:44 PM PST by Egon (I stand beside you as your partner, in front as your defender, behind as... hey! nice butt!)
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To: texas booster

http://jmol.sourceforge.net/fah/

Here is a link to a library of the molecules that we solve.

Grab a protein, right click and you can set the spin. Will rotate so you can see all sides.

Fun to play with!


11 posted on 12/23/2006 12:53:07 PM PST by texas booster (Join FreeRepublic's Folding@Home team (Team # 36120))
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To: texas booster

OK, I joined and I guess it's working because I got pictures of silver, blue and pink popcorn balls on my screen that keep changing shape.


12 posted on 12/23/2006 1:25:02 PM PST by txroadkill (Time magazine's 'Person of the year')
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To: txroadkill

Which work unit are you folding?

I am working on p_2125_lambda_5way_melt. It takes about a week to finish.


13 posted on 12/23/2006 1:48:07 PM PST by texas booster (Join FreeRepublic's Folding@Home team (Team # 36120))
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To: txroadkill

Great to have you on board!

I'm down one machine at the moment but still chugging along.
Every little bit helps.


14 posted on 12/23/2006 1:53:24 PM PST by Uriah_lost (We've got enough youth, how about a "fountain of smart")
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To: texas booster
Give a Christmas gift to humanity!!!

Join the FReeper team and Fold @ Home!!!

...thanks for your posts, TX!!

15 posted on 12/23/2006 2:34:04 PM PST by paulat
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To: texas booster

Merry Christmas Folding Bump!


16 posted on 12/23/2006 2:43:07 PM PST by DocRock
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To: texas booster
Question?

I got a little p3301_ribcomp. It's going by increments of two. It says 50 frames, But, I'm up to 56 frames already. Could that be a messup somewhere?

17 posted on 12/23/2006 3:47:35 PM PST by processing please hold
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To: texas booster

p2138_ww2138 says it will be finished on 31 Dec 06....whatever that means...


18 posted on 12/23/2006 4:19:47 PM PST by txroadkill (Time magazine's 'Person of the year')
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To: processing please hold

No, one frame "clock" increments by even numbers (50 or 100) and the other frame clock is exact.


19 posted on 12/23/2006 7:06:03 PM PST by texas booster (Join FreeRepublic's Folding@Home team (Team # 36120))
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To: txroadkill

A detailed explanation is found here:

http://fah-web.stanford.edu/cgi-bin/allprojects#2127

and scroll down to p2138.

"The villin headpiece is a fragment of the protein villin, and is formed from three helices which are packed together. Villin is a protein that helps maintain a mesh of fibers (made from the protein actin) that serves as a sort of skeleton for the cell."

In particular, p2138 is using an improved treatment for the electrostatic forces.


20 posted on 12/23/2006 7:12:33 PM PST by texas booster (Join FreeRepublic's Folding@Home team (Team # 36120))
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To: texas booster

Bump


21 posted on 12/23/2006 7:15:11 PM PST by JCEccles
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To: txroadkill
Your protein will finish New Years Eve (party!) and you will gain 385 points.

Here is what the villin protein looks like:

Kinda cute, for a protein.

Notice how curly the protein is? All proteins are rolled up inside the cell and must be uncurled to actually do anything. Stanford is doing detailed studies of this folding and unfolding, usually in the presense of water, sometimes with urea or or other molecules.

It is when these protein do NOT fold correctly that diseases can be manifested.

22 posted on 12/23/2006 7:19:46 PM PST by texas booster (Join FreeRepublic's Folding@Home team (Team # 36120))
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To: texas booster

For the last couple days my folding@home protein says "Could not connect to Work Server." My husband is connected on two other computers and his says the same. Is this a problem with our computers or is everyone else getting the same message? It has been working well up until a couple days ago when my protein finished.


23 posted on 12/23/2006 7:54:03 PM PST by mschalock
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To: mschalock

Are you using the GUI client or the Console? Do all three boxes have team 36120 and name "mschalock"?

The most common problem is that the client has "Use IE Settings". Make sure that that box is unchecked.

Also, if you have upgraded to IE 7 then consider IE 7 evil. Make sure that the client is not using IE Settings or a proxy.

One work unit was uploaded (p2124) to server 171.65.103.160 last Wednesday. Which computer could that be, and what do the logs say?

You can also track your stats here:

http://fahstats.com/usum.php?u=887886


24 posted on 12/23/2006 8:30:25 PM PST by texas booster (Join FreeRepublic's Folding@Home team (Team # 36120))
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To: texas booster

Thanks. Shoot, there must be a large group of p3301 and they gave them all to me. I've got two more. My numbers will never go up if I keep getting 47 pointers. Oh well, luck of the draw I guess.


25 posted on 12/23/2006 9:08:58 PM PST by processing please hold
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To: texas booster

Lately most of my WUs have been 20K frame units, with some up to 50K. Today the new one is 25 frames. Hmmm


26 posted on 12/23/2006 9:22:23 PM PST by Professional Engineer (As far as we know, all numbers are imaginary. some just hurt your brain more than others. ~ lepton)
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To: texas booster
As always, thanks for the ping!

I'm home for the celebration of Our Lord's birth, so I pulled "Big Unit" out of the truck and added it back. :) She already gave us 130 points in less than 8 hours, not bad for laptop.

Coming up on my one year anniversary in about 4 days, I'll have over 78k by then. I'm now in 16960th place!

Thanks ever so much, Texas Booster, for inviting me and allowing me to be a part of something so great this year.

In case I get busy and don't post on Christmas...


Merry Christmas to you and yours! (that's for ALL FReepers, especially the folders)


:O)

P
27 posted on 12/23/2006 10:33:08 PM PST by papasmurf (Join Team 36120 Free Republic Folders. Folding@Home Enter Name:FRpapasmurf)
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To: texas booster

Oops! My bad. I just read through my log. It was 11 hours 55 minutes. {blush-blush}

:O)

P


28 posted on 12/23/2006 11:20:40 PM PST by papasmurf (Join Team 36120 Free Republic Folders. Folding@Home Enter Name:FRpapasmurf)
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To: texas booster
Here is a screen shot of what our team looked like on 11/28/06, right after my first WU posted.

Photobucket - Video and Image Hosting

I would dare say, our progress is a testimony to the power of the wonderful people on FR.

29 posted on 12/24/2006 5:29:07 AM PST by dfwddr (Join our Folding@Home team (Team# 36120) keyword:folding.)
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To: dfwddr
Here is a screen shot of what our team looked like on 11/28/06, right after my first WU posted.

You mean 2005, right?

;-)

30 posted on 12/24/2006 5:43:18 AM PST by Egon (I stand beside you as your partner, in front as your defender, behind as... hey! nice butt!)
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To: processing please hold

p3301: These projects take advantage of the double precision core FahCore_79.exe. They examine the interaction of small molecules with the ribosome, using an explicit water model.

Doesn't that make you feel better now that you know what your baby is doing?

These are small cores (even if they are modeling 24,802 molecules) and should only take 5 to 8 hours.

If you or one of your talented family has time, ping Egon and get his monitor installed. He is a very good programmer and it will watch your systems for you.

Mail at ya!


31 posted on 12/24/2006 5:47:15 AM PST by texas booster (Join FreeRepublic's Folding@Home team (Team # 36120))
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To: Professional Engineer

It looks like you are getting bunches of small WUs. You'll get a big'un, then pop out 47 pointers every couple of hours.

Do you only have one machine crunching on these? Must be a nice system.

http://fahstats.com/usum.php?u=809533


32 posted on 12/24/2006 6:00:49 AM PST by texas booster (Join FreeRepublic's Folding@Home team (Team # 36120))
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To: dfwddr

Woohoo!! 48 points!

That screenshot was from the days when I used one name unique name for each system. If one stopped reporting I could go over and reboot the system.

From 48 points to 200,000 in just over a year. you have done quite well!


33 posted on 12/24/2006 6:06:54 AM PST by texas booster (Join FreeRepublic's Folding@Home team (Team # 36120))
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To: Egon
You mean 2005, right?

Whoops.... maybe I'll lay off the eggnog till a little later... LOL

34 posted on 12/24/2006 6:34:28 AM PST by dfwddr (Join our Folding@Home team (Team# 36120) keyword:folding.)
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To: texas booster
you have done quite well!

As has everybody !!!! A big thanks to you for starting this team, and systematic for bringing it to our attention. I've had a lot of fun with this over the past year.

35 posted on 12/24/2006 6:45:17 AM PST by dfwddr (Join our Folding@Home team (Team# 36120) keyword:folding.)
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To: dfwddr
maybe I'll lay off the eggnog till a little later...

We're smack in the middle of the twelve days of Christmas wine here!

36 posted on 12/24/2006 7:01:25 AM PST by Egon (I stand beside you as your partner, in front as your defender, behind as... hey! nice butt!)
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To: Egon

I need more nog to get rid of those sugarplums dancin' in my head.


37 posted on 12/24/2006 7:18:59 AM PST by Drango (A liberal's compassion is limited only by the size of someone else's wallet.)
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To: texas booster

One machine until recently. Now three.

Main system is my CAD workstation in the office.


38 posted on 12/24/2006 8:08:38 AM PST by Professional Engineer (As far as we know, all numbers are imaginary. some just hurt your brain more than others. ~ lepton)
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To: texas booster

Merry Christmas to you and yours. Thanks for the invite many moons ago. Thanks for all your (and others) hard work on this program. I'd name them all but, alas, I've had too much eggnog this night.


39 posted on 12/24/2006 10:25:31 PM PST by houeto (Jacob's enemy is the revitalized end-time beast!)
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To: Egon

Shameless self-promotion my achin' behinney. I use your wonderful program almost every single day! Thanks Egon!!


40 posted on 12/24/2006 10:39:49 PM PST by houeto (Jacob's enemy is the revitalized end-time beast!)
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To: txroadkill
Don't I remember you from a time ago when you were concerned about being on dial up?

sign me..EggNog Enduced!

41 posted on 12/24/2006 10:43:12 PM PST by houeto (Jacob's enemy is the revitalized end-time beast!)
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To: texas booster
I am working on p_2125_lambda_5way_melt. It takes about a week to finish.

Those are more common now than a pimple on a fat lady's butt!

42 posted on 12/24/2006 10:44:46 PM PST by houeto (Jacob's enemy is the revitalized end-time beast!)
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To: Uriah_lost
Every little bit helps.

Got that right!

43 posted on 12/24/2006 10:45:31 PM PST by houeto (Jacob's enemy is the revitalized end-time beast!)
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To: paulat
paulat, Merry christmas!
44 posted on 12/24/2006 10:46:19 PM PST by houeto (Jacob's enemy is the revitalized end-time beast!)
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To: JCEccles
JCEccles_____________Folks, listen up.....rhis is one POWERFUL FOLDER1

tHANKS, JCEccles

dARN, i LOVE EGGNOG!!!!!!!!

45 posted on 12/24/2006 10:49:29 PM PST by houeto (Jacob's enemy is the revitalized end-time beast!)
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To: texas booster

Lukslikemy X WiiFe.....

Daminit, I lUv egGnoG!!!

46 posted on 12/24/2006 10:53:01 PM PST by houeto (Jacob's enemy is the revitalized end-time beast!)
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To: houeto

not me, I haven't been on dial up for years.


47 posted on 12/24/2006 10:54:22 PM PST by txroadkill (Time magazine's 'Person of the year')
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To: texas booster
Are you using the GUI client or the Console?

You;re old enough around here to know that talking like that can get u banned from FR!

48 posted on 12/24/2006 10:58:56 PM PST by houeto (Jacob's enemy is the revitalized end-time beast!)
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To: processing please hold; Klutz Dohanger
Shoot, there must be a large group of p3301 and they gave them all to me. I've got two more. My numbers will never go up if I keep getting 47 pointers.

Call Klutz. I heard he has an antidote!

49 posted on 12/24/2006 11:00:50 PM PST by houeto (Jacob's enemy is the revitalized end-time beast!)
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To: Professional Engineer
Lately most of my WUs have been 20K frame units, with some up to 50K. Today the new one is 25 frames. Hmmm

You're obviously not eating your spinach!

50 posted on 12/24/2006 11:06:40 PM PST by houeto (You should leave yourself open to the possiblity that the author of this piece is on eggnog)
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